Actually, it seems to me that it's a problem with the dockable window and not the explorer bar.
I made a little project to show the problem.
With this little demo, the problem doesn't appear as often as in the true project. But you will be able to see it.
I noticed that it appears when the dockable window has lost focus when you click again on a link.
So, develop the task panes, scroll down, click a link, then click the document I added to make the dockable window to loose focus, and then click again on a link.
Thanks for your help.
Frédéric